Publications

Publications

2014

  • García JL, Rozas D, del Cerro C, Nogales J, El-Said Mohamed M, Díaz E. [2014] Genome sequence of Pseudomonas azelaica HBP1, which catabolizes 2-hydroxybiphenyl fungicide. Genome Announc 13: e01248-13. [PubMed]
  • Fernández C, Díaz E, García JL [2014] Insights on the regulation of the phenylacetate degradation pathway from Escherichia coli. Environ Microbiol Rep.6:239-250
  • García JL, Díaz E [2014] Plasmids as tools for containment. Microbiology Spectrum 2 (5): doi:10.1128/microbiolspec.PLAS-0011-2013
  • Valderrama JA, Shingler V, Carmona M, Díaz E. [2014] AccR is a master regulator involved in carbon catabolite repression of the anaerobic catabolism of aromatic compounds in Azoarcus sp. CIB. J. Biol. Chem. 289: 1892-1904. [PubMed]

2013

  • Drzyzga O, Prieto A, Díaz E, García JL. [2013] Waste conversion technologies. Bioplastics from syngas fermentation. G.I.T. Laboratory Journal. 7-8:14-15. [Link]
  • Jiménez JI, Pérez-Pantoja D, Chavarría M, Díaz E, de Lorenzo V. [2013] A second chromosomal copy of the catA gene endows Pseudomonas putida mt-2 with an enzymatic safety valve for excess of catechol. Environ. Microbiol. doi: 10.1111/1462-2920.12361. [PubMed]
  • Zamarro Molina MT, López-Barragán MJ, de la Peña Moreno F, Prieto Jiménez MA, Carmona Pérez M, García López JL, Díaz Fernández E. [2013] Procedimiento de obtención de polihidroxibutirato mediante fermentación de la bacteria Azoarcus sp. CIB y ácido orgánico como fuente de carbono. Patente española No. Solicitud: P201330102. Fecha: 29 de Enero de 2013.
  • Durante-Rodríguez G, Mancheño JM, Rivas G, Alfonso C, García JL, Díaz E, Carmona M. [2013] Identification of a missing link of the evolution from an enzyme into a transcriptional regulator. PLoS ONE 8: e57518. [PubMed]
  • Díaz E, Jiménez JI, Nogales J. [2013] Aerobic degradation of aromatic compounds. Curr. Opin. Biotechnol. 24: 431-442. [PubMed]
  • Juárez JF, Zamarro MT, Eberlein C, Boll M, Carmona M, Díaz E. [2013] Characterization of the mbd cluster encoding the anaerobic 3-methylbenzoyl-CoA central pathway. Environ. Microbiol. 15: 148–166. [PubMed]

2012

  • Valderrama JA, Durante-Rodríguez G, Blázquez B, García JL, Carmona M, Díaz E. [2012] Bacterial degradation of benzoate: cross-regulation between aerobic and anaerobic pathways. J Biol Chem 287: 10494-10508. [PubMed]

2011

  • Jiménez JI, Juárez JF, García JL, Díaz E. [2011] A finely tuned regulatory circuit of the nicotinic acid degradation pathway in Pseudomonas putida. Environ. Microbiol. 13: 1718-1732. [PubMed]
  • Nogales J, Canales A, Jiménez-Barbero J, Serra B, Pingarrón JM, García JL, Díaz E. [2011] Unravelling the gallic acid degradation pathway in bacteria: the gal cluster from Pseudomonas putida. Mol Microbiol 79: 359-374. [PubMed]

2010

  • Durante-Rodríguez G, Valderrama JA, Mancheño JM, Rivas G, Alfonso C, Arias-Palomo E, Llorca O, García JL, Díaz E, Carmona M. [2010] Biochemical characterization of the transcriptional regulator BzdR from Azoarcus sp. CIB. J Biol Chem 285: 35694-35705. [PubMed]
  • Jiménez JI, Acebrón I, García JL, Díaz E, Mancheño JM. [2010] A preliminary crystallographic study of recombinant NicX, a Fe2+-dependent 2,5-dihydroxypyridine dioxygenase from Pseudomonas putida KT2440. Acta Crystallogr Sect F Struct Biol Cryst Commun. 66:549-553. [PubMed]
  • Jiménez JI, Nogales J, García JL, Díaz E. [2010] A genomic view of the catabolism of aromatic compounds in Pseudomonas. Ed: Timmis, KN. Section Ed: de Lorenzo, V. Handbook of Hydrocarbon and Lipid Microbiology. Part 14. Springer Berlin Heidelberg. pp. 1297-1325. [Link]
  • Díaz E, García JL. [2010] Genetics engineering for removal of sulfur and nitrogen from fuel heterocycles. Ed: Timmis, KN. Handbook of Hydrocarbon and Lipid Microbiology. Part 26. Springer Berlin Heidelberg. pp. 2787-2801. [Link]
  • Juárez JF, Zamarro MT, Barragán MJL, Blázquez B, Boll M, Kuntze K, García JL, Díaz E, Carmona M. [2010] Identification of the Geobacter metallireducens BamVW two-component system, involved in transcriptional regulation of aromatic degradation. Appl Environ Microbiol 76: 383-85. [PubMed]

2009

  • Martínez López V, Díaz Fernández E, García González P, García López JL, Duque Martín de Oliva E, Ramos Martín J L, Prieto Jiménez MA. [2009] Sistema de autolisis celular para el procesado de la biomasa bacteriana en la produccion de polihidroxialcanoatos en Pseudomonas putida KT2440. Patente española P20093125.Fecha de prioridad: 23-12-2009. Licencia exclusiva: BIOPOLIS S.L.
  • Manso I, Torres B, Andreu JM, Menéndez M, Rivas G, Alfonso C, Díaz E, García JL, Galán B. [2009] 3-Hydroxyphenylpropionate and phenylpropionate are synergistic activators of the MhpR transcriptional regulator from Escherichia coli. J Biol Chem 284:21218-28. [PubMed]
  • Calzada J, Zamarro MT, Alcón A, Santos VE, Díaz E, García JL, García-Ochoa F. [2009] Analysis of the dibenzothiophene desulfurization in a recombinant Pseudomonas putida strain. Appl Environ Microbiol 75: 875- 877. [PubMed]
  • Carmona M, Zamarro MT, Blázquez B, Durante-Rodríguez G, Juárez JF, Valderrama JA, Barragán MJL, García JL, Díaz E. [2009] The anaerobic catabolism of aromatic compounds: a genetic and genomic view. Microbiol Mol Biol Rev 73: 71-133. [PubMed]

2008

  • Jiménez JI, Canales A, Jiménez-Barbero J, Ginalski K, Rychlewski L, García JL, Díaz E. [2008] Deciphering the genetic determinants for aerobic nicotinic acid degradation: the nic cluster from Pseudomonas putida KT2440. Proc Nat Acad Sci USA 105:11329-11334. [PubMed]
  • Carmona M, Prieto MA, Galán B, García JL, Díaz E. [2008] Signaling networks and design of pollutant biosensors. Ed. E. Díaz. Microbial Biodegradation. Genomics and Molecular Biology. Caister Academic Press. Norfolk, UK. pp. 97-143. [Link]
  • Durante-Rodríguez G, Zamarro MT, García JL, Díaz E, Carmona M. [2008] New insights into the BzdR-mediated transcriptional regulation of the anaerobic catabolism of benzoate in Azoarcus sp. CIB. Microbiology 154:306-316. [PubMed]
  • Blázquez B, Carmona M, García JL, Díaz E. [2008] Identification and analysis of a glutaryl-CoA dehydrogenase-encoding gene and its cognate transcriptional regulator from Azoarcus sp. CIB. Environ Microbiol 10:474-482. [PubMed]
  • Díaz E. [2008] Microbial Biodegradation: Genomics and Molecular Biology. Caister Academic Press. Norfolk, UK. ISBN 78-1-904455-17-2. [Link]

2007

  • Nogales J, Macchi R, Franchi F, Barzaghi D, Fernández C, García JL, Bertoni G, Díaz E. [2007] Characterization of the last step of the aerobic phenylacetic acid degradation pathway. Microbiology 153:357-365. [PubMed]

2006

  • Fernández C, Ferrández A, Miñambres B, Díaz E, García JL. [2006] Genetic characterization of the Phenylacetyl-coenzymeA oxygenase from the aerobic phenylacetic acid degradation pathway of Escherichia coli. Appl. Environ. Microbiol. 72:7422-7426. [PubMed]
  • Yuste L, Hervás AB, Canosa I, Tobes R, Jiménez JI, Nogales J, Pérez-Pérez M, Santero E, Díaz E, Ramos JL, de Lorenzo V, Rojo F. [2006] Growth-phase dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analyzed with a genome-wide DNA microarray. Environ Microbiol 8:165-177. [PubMed]
  • del Peso-Santos T, Bartolomé-Martín D, Fernández C, Alonso S, García JL, Díaz E, Shingler V, Perera J. [2006] Coregulation by phenylacetyl-coenzyme A-responsive PaaX integrates control of the upper and lower pathways for catabolism of styrene by Pseudomonas sp. strain Y2. J Bacteriol 188:4812-4821. [PubMed]
  • Durante-Rodríguez G, Zamarro MT, García JL, Díaz E, Carmona M. [2006] Oxygen-dependent regulation of the central pathway for the anaerobic catabolism of aromatic compounds in Azoarcus sp. strain CIB. J Bacteriol. 188:2343-2354. [PubMed]

2005

  • Jiménez Zarco JI, García López JL, Díaz Fernández E. [2005] Microorganismo productor de ácido 6-hidroxinicotínico (6-HNA), procedimiento de obtención, elementos para su realización y aplicaciones. Patente Española. Nº Solicitud: 200501209.
  • Nogales J, Canales A, Jiménez-Barbero J, García JL, Díaz E. [2005] Molecular Characterization of the Gallate Dioxygenase from Pseudomonas putida KT2440: the Prototype of a New Subgroup of Extradiol Dioxygenases. J. Biol. Chem. 280:35382-35390. [PubMed]
  • Carmona M, Díaz E. [2005] Iron-reducing bacteria unravel novel strategies for the anaerobic catabolism of aromatic compounds. Mol. Microbiol. 58, 1210-1215. [PubMed]
  • Barragán MJL, Blázquez B, Zamarro MT, Mancheño JM, García JL, Díaz E, Carmona M. [2005] BzdR, a repressor that controls the anaerobic catabolism of benzoate in Azoarcus sp. CIB, is the first member of a new subfamily of transcriptional regulators. J. Biol. Chem. 280, 10683-10694. [PubMed]
  • Carmona M, Fernández S, Rodríguez MJ, de Lorenzo V. [2005] m-Xylene responsive Pu/PnifH hybrid sigma-54 promoters that overcome physiological control in Pseudomonas putida KT2442. J. Bacteriol. 187, 125-134. [PubMed]
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